CESSHIV-1 database

General information on HIV-1 isolate

# 321

Accession number	AY463223
Name	C.ZA.J54Ma
Subtype	C
Country	South Africa
Sampling year	2001
Patient	J54Ma

AY463223 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy