CESSHIV-1 database

General information on HIV-1 isolate

# 331

Accession number	AY463233
Name	C.ZA.1178MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1178M

AY463233 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gaggc----ggtga gtacgccaaa attttatttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy