CESSHIV-1 database

General information on HIV-1 isolate

# 333

Accession number	AY463235
Name	C.ZA.2004MB
Subtype	C
Country	South Africa
Sampling year	2001
Patient	2004M

AY463235 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cactcggcaa gaggcgaggg g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy