CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3526
Accession number AY508135
Name 7_E5
SubtypeB
CountryUSA
Submitted to NCBI 2003

AY508135 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcgact tgctgaagcg cgcacagcaa gaggcgagag gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012