CESSHIV-1 database

General information on HIV-1 isolate

# 3540

Accession number	AY508149
Name	8_C7
Subtype	B
Country	USA
Submitted to NCBI	2003

AY508149 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY508126(#3517) AY508132(#3523) AY508133(#3524) AY508134(#3525) AY508137(#3528) AY508139(#3530) AY508140(#3531) AY508144(#3535) AY508146(#3537) AY508147(#3538) AY508150(#3541) AY508153(#3544) AY508154(#3545) AY508158(#3549) M38429(#15)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy