CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1129
Accession number AY536235
Name CH12
SubtypeBF
CountryChile
Sampling year 2001
PatientCH12

AY536235 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggasymggct tgctgaagtg cacaaggcaa gmggcgagrg gagcggcgac tggtgagtac tgccaaa-ttt tgactagcag aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012