CESSHIV-1 database

General information on HIV-1 isolate

# 383

Accession number	AY560109
Name	98USHVTN8229c6
Subtype	B
Country	USA
Sampling year	1998
Patient	8229

AY560109 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgcagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy