CESSHIV-1 database

General information on HIV-1 isolate

# 670

Accession number	AY586542
Name	Cu19
Subtype	B
Country	Cuba
Sampling year	1999
Patient	CU19

AY586542 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB371848(#3489) AY856988(#1604) EF178349(#1677) EF363122(#964) EF363123(#965) EF370378(#1799) GU362886(#3845) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy