CESSHIV-1 database

General information on HIV-1 isolate

# 3198

Accession number	AY676588
Name	HDC236
Subtype	J
Country	Angola
Sampling year	2001
Patient	HDC236

AY676588 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gtgc acacagcaag aggcgagggg cggcgactgg tgagtacgcc aaatattttt tgactagcag aggctagaag gagagc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy