CESSHIV-1 database

General information on HIV-1 isolate

# 3164

Accession number	AY676589
Name	HDC239
Subtype	D
Country	Angola
Sampling year	2001
Patient	HDC239

AY676589 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacagcaag aggcgagggg cagcgactgg tgagtacgct gaaatttttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy