CESSHIV-1 database

General information on HIV-1 isolate

# 3436

Accession number	AY676590
Name	SNS09
Subtype	C
Country	Angola
Sampling year	2001
Patient	SNS09

AY676590 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctaaagtg cacttggcan gaggcgagng -cggcgactgg tgagtacgct gaactttatt tgactagcgg aggctagggg gggaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy