CESSHIV-1 database

General information on HIV-1 isolate

# 373

Accession number	AY682547
Name	04RU128005
Subtype	B
Country	Russia
Sampling year	2004
Patient	1280

AY682547 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaaattt tttttgacta gcggaggcta gaaggagaga 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy