CESSHIV-1 database

General information on HIV-1 isolate

# 607

Accession number	AY835753
Name	5155-96 clone np8
Subtype	B
Country	USA
Sampling year	1996
Patient	5155

AY835753 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB371884(#3503) AF042103(#45) AF408629(#154) AY586543(#671) AY771588(#445) AY819715(#422) AY835755(#587) AY835756(#588) AY835757(#589) DQ295193(#570) DQ358803(#744) EF370241(#1718) EF370243(#1720) EF370259(#1731) EF514701(#1011) EU047649(#1845) EU047671(#2843) FJ495937(#2005) FJ495938(#2006) FJ495939(#2007) FJ495941(#2009) FJ495942(#2010) FJ495943(#2011) FJ495957(#2888) FJ495958(#2889) FJ495961(#2890) FJ495962(#2891) FJ495963(#2892) FJ495973(#2893) FJ495974(#2894) FJ495975(#2895) FJ495976(#2896) FJ495977(#2897) FJ495978(#2898) FJ495979(#2899) FJ495980(#2900) FJ495981(#2901) FJ495991(#2902) FJ495992(#2903) FJ495993(#2904) FJ495994(#2905) FJ495995(#2906) FJ495996(#2907) FJ495997(#2908) FJ495998(#2909) FJ495999(#2910) FJ853622(#3251)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy