CESSHIV-1 DATABASE

General information on HIV-1 isolate

# 602

Accession number	AY835777
Name	5018-83 clone pbf4
Subtype	B
Country	USA
Sampling year	1983
Patient	5018

AY835777 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

Isolates with identical sequences of region:

AF003887(#1069) AF003888(#1197) AF004394(#22) AF033819(#1391) AF070521(#23) AF224507(#277) AF408628(#153) AX032749(#1082) AX078307(#1536) AX316202(#1083) AX419821(#1535) AX772015(#1086) AY161892(#3221) AY161894(#3224) AY173951(#244) AY508128(#3519) AY508143(#3534) AY508151(#3542) AY508152(#3543) AY751406(#393) AY835748(#583) AY835750(#585) AY835754(#586) AY835758(#608) AY835759(#590) AY835760(#591) AY835761(#609) AY835762(#592) AY835763(#593) AY835764(#594) AY835765(#610) AY835766(#611) AY835767(#595) AY835768(#582) AY835769(#596) AY835770(#597) AY835771(#598) AY835773(#599) AY835774(#600) AY835775(#601) AY835778(#603) AY835779(#604) AY835780(#605) AY835781(#614) AY857176(#1661) BD238372(#1088) BD298114(#1667) BD410064(#1089) CS182148(#3553) CS272319(#1092) CS486347(#3554) CS793683(#3475) CS793684(#1093) D86069(#1095) DD153311(#1097) DD153312(#1098) DL260745(#1670) DM111087(#2820) DM461230(#3476) DM461231(#3477) EF178399(#1693) EF363124(#966) EF370247(#1726) EF370303(#1752) EF370331(#1774) EU541617(#1046) EU735536(#1050) EU786672(#1185) FB341548(#1902) FB707281(#1903) GQ452298(#2782) HH978650(#3848) HI553377(#3879) K02083(#70) K03455(#1182) L02317(#2367) M13136(#1099) M15654(#1) M19921(#1100) M38431(#16) NC_001802(#0) U26942(#2499) U63632(#2517) U69584(#254) U69585(#255) U69586(#256) U69587(#257) U69588(#258) U69589(#259) X01762(#64)

The optimal secondary structure: