CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1462
Accession number AY856978
Name 800575
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient800575

AY856978 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacrgcaa gaggcgaggg gcggcggctg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF178330(#1461)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy