CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1460
Accession number AY857008
Name 2360047
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient2360047

AY857008 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gycggcgact ggtgagtacg ccaaattttt tgactagcgg aggctaaaag gagaga

Isolates with identical sequences of region:

EF178323(#1459)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy