CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1617
Accession number AY857013
Name 2604752
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient2604752

AY857013 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cataaatttt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF178403(#1695)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy