CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1627
Accession number AY857029
Name 3350218
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient3350218

AY857029 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgctcggca agaggcgagg ggcggcgact ggtgagtacg ccaaaaattg tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EF178358(#1681)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy