CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1633
Accession number AY857045
Name 4216482
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient4216482

AY857045 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF178414(#1702)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy