CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1634
Accession number AY857053
Name 4756961
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient4756961

AY857053 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt tttgactagc agaggctaga aggagaga

Isolates with identical sequences of region:

EF178420(#1705)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy