CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1638
Accession number AY857068
Name 5274861
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient5274861

AY857068 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtragtacgc caaaaaattt ttactagcgg aggctataaa gagaga

Isolates with identical sequences of region:

EF178372(#1685)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy