CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1648
Accession number AY857110
Name 7130706
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient7130706

AY857110 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgaccg gtgagtacgc caaac-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EF178322(#1612)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy