CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1458
Accession number AY857128
Name 7974623
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient7974623

AY857128 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ctttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EF178315(#1457)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy