CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1651
Accession number AY857133
Name 8130991
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient8130991

AY857133 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgckgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaaatttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EF178396(#1690)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy