CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1654
Accession number AY857140
Name 8594192
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient8594192

AY857140 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgctcggcaa gaggcgaggg gcggcgactg gtgagtacgc ccat--ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy