CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1655
Accession number AY857153
Name 8820638
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient8820638

AY857153 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaacttttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF178418(#1704) EF370281(#1742)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy