CESSHIV-1 database

General information on HIV-1 isolate

# 520

Accession number	AY878062
Name	04ZASK181B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-181

AY878062 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gcggcggctg gtgagtacgc ctaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy