CESSHIV-1 database

General information on HIV-1 isolate

# 527

Accession number	AY878069
Name	03ZASK042B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-042

AY878069 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg g-ggcgactgg tgagtacgcc aatttttact tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy