CESSHIV-1 database

General information on HIV-1 isolate

# 1422

Accession number	AY894993
Name	CU68
Subtype	CRF18_cpx
Country	Cuba
Sampling year	1999
Patient	CU68

AY894993 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc gaaatttttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy