CESSHIV-1 database

General information on HIV-1 isolate

# 432

Accession number	AY901969
Name	03ZASK066B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-066

AY901969 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag gcggcggctg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy