CESSHIV-1 database

General information on HIV-1 isolate

# 435

Accession number	AY901972
Name	04ZASK082B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-082

AY901972 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggc ggcggcggct ggtgagtacg cctttt-attt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy