CESSHIV-1 database

General information on HIV-1 isolate

# 436

Accession number	AY901973
Name	04ZASK140B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-140

AY901973 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcgactg gtgagtacgc cgaaatttta tttgactagc ggaggctaga aggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy