CESSHIV-1 database

General information on HIV-1 isolate

# 444

Accession number	AY901981
Name	03ZASK084B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-084

AY901981 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcgactg gtgagtacgc cgattttatt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy