CESSHIV-1 database

General information on HIV-1 isolate

# 459

Accession number	DQ011169
Name	03ZASK118B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-118

DQ011169 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc attttatttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy