CESSHIV-1 database

General information on HIV-1 isolate

# 467

Accession number	DQ011177
Name	04ZASK136B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-136

DQ011177 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag gcggcgactg gtgagtacgc cgaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy