CESSHIV-1 database

General information on HIV-1 isolate

# 469

Accession number	DQ011179
Name	04ZASK159B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-159

DQ011179 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgaggg g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy