CESSHIV-1 database

General information on HIV-1 isolate

# 667

Accession number	DQ017382
Name	04CM-1015-04
Subtype	group N
Country	Cameroon
Sampling year	2004
Patient	1015

DQ017382 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct cgttgg-gtgc acacagcgag aggcgaggcg gcggaagtg-t gagtacgca----a ttttgactgg cggtggccag aaagcaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy