CESSHIV-1 database

General information on HIV-1 isolate

# 474

Accession number	DQ056404
Name	03ZASK111B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-111

DQ056404 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcag gaggcgagag g-ggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy