CESSHIV-1 database

General information on HIV-1 isolate

# 575

Accession number	DQ085871
Name	BREPM11948
Subtype	CRF29_BF
Country	Brazil
Sampling year	1999
Patient	11948

DQ085871 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt tgactagcga aggctaaaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy