CESSHIV-1 database

General information on HIV-1 isolate

# 578

Accession number	DQ085874
Name	BREPM12817
Subtype	CRF28_BF
Country	Brazil
Sampling year	1999
Patient	12817

DQ085874 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caat--ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy