CESSHIV-1 database

General information on HIV-1 isolate

# 580

Accession number	DQ085876
Name	BREPM16704
Subtype	CRF29_BF
Country	Brazil
Sampling year	2001
Patient	16704

DQ085876 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggccaggg gccgccaccg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy