CESSHIV-1 database

General information on HIV-1 isolate

# 496

Accession number	DQ093592
Name	03ZAPS079B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	079B1

DQ093592 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg g-ggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctaggag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy