CESSHIV-1 database

General information on HIV-1 isolate

# 504

Accession number	DQ093600
Name	04ZAPS216B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	216B1

DQ093600 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgacgtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy