CESSHIV-1 database

General information on HIV-1 isolate

# 1430

Accession number	DQ157843
Name	DJO0135
Subtype	Group N
Country	Cameroon
Sampling year	2002
Patient	DJO0135

DQ157843 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct cgttg--gtgcg cacagcgaga ggcgaggcgg cggaagtg-tg agtacgca----at tttgactggc ggtggccaga aagcaggaga ga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy