CESSHIV-1 database

General information on HIV-1 isolate

# 541

Accession number	DQ164104
Name	03ZASK010B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	010B2

DQ164104 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy