CESSHIV-1 database

General information on HIV-1 isolate

# 549

Accession number	DQ164112
Name	04ZAPS211B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	211B1

DQ164112 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tggctagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy