CESSHIV-1 database

General information on HIV-1 isolate

# 553

Accession number	DQ164116
Name	04ZAPS170B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	170B1

DQ164116 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gaactcggct tgctgaagtg cactcggcaa gaggcgagag a-ggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agagt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy