CESSHIV-1 database

General information on HIV-1 isolate

# 558

Accession number	DQ164121
Name	04ZAPS168B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	168B1

DQ164121 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcagcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy