CESSHIV-1 database

General information on HIV-1 isolate

# 561

Accession number	DQ164124
Name	03ZASK086B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	086B1

DQ164124 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaaag -cggcggctgg tgagtacgcc tttt-atttga ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy