CESSHIV-1 database

General information on HIV-1 isolate

# 562

Accession number	DQ164125
Name	04ZAPS187B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	187B1

DQ164125 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg aaaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy